Inaugural

Maximizing Protein Production Workflows

End-to-End Laboratory Managment

May 5 - 6, 2022 | Hynes Convention Center, Boston, MA | EDT

Protein production is so much more than the act of expressing the protein itself. During Cambridge Healthtech Institute's Maximizing Protein Production Workflows: End-to-End Laboratory Management conference, we take a step back to gain a broad view of the end-to-end protein production workflow to uncover strategies to reduce cycle time. Topics will include assessing your throughput needs, incorporation of automation to increase throughput, and critically evaluating your protein production process to address bottlenecks and increase efficiency.

Sunday, May 1

2:00 pm Recommended Pre-Conference Short Course*

SC2: Introduction to Lipid Nanoparticle Characterization and Formulation
*Short Courses will be offered in-person only. Separate registration required. See short course page for details. 

Tuesday, May 3

6:30 pm Dinner Short Courses*

 

*Short Courses will be offered in-person only. Separate registration required. See short course page for details.

Thursday, May 5

7:30 am Registration and Morning Coffee (Hynes Main Lobby)

ROOM LOCATION: 304

WORKFLOW MANAGEMENT: MEETING YOUR CUSTOMERS NEEDS BY INCREASING PRODUCTION EFFICIENCY

8:25 am Welcome by Conference Organizer

Mary Ann Brown, Executive Director, Conferences, Cambridge Healthtech Institute

8:30 am PANEL DISCUSSION:

Protein Production Lab Challenges: Methodologies, Strategies, and the Art of Managing Multiple Projects

Panel Moderator:
Richard Altman, MS, Field Application Scientist, Life Science Solutions, Thermo Fisher Scientific

Protein production laboratories provide crucial support to drug discovery efforts.  As we would expect, there are numerous challenges in the effective operation of these critically needed facilities. This panel discussion will focus on the concepts, technologies, and strategies necessary to meet the ever-increasing need for recombinant proteins.

  • How to build an effective expression facility ​
  • ​​Prioritizing projects or asking the right questions
  • Total workflow efficiency
  • Engaging and developing team members
  • The importance of tech development to long term success
Panelists:
David Blum, PhD, Director, Bioexpression & Fermentation Facility, Biochemistry & Molecular Biology, University of Georgia
Oleg Brodsky, Senior Principal Scientist, Structural Biology & Protein Sciences, Pfizer Inc.
Dominic Esposito, PhD, Director, Protein Sciences, Frederick National Laboratory
Ruth L. Saxl, PhD, Protein Chemistry Scientist, Scientific Services, Jackson Laboratory
Bjørn Voldborg, MSc, Head, National Biologics Facility, DTU Bioengineering, Technical University of Denmark
Jessica A. Williamson, PhD, Protein Production Lead, UCB
Lindsay Morrison, PhD, Principal Scientist, Waters Corporation

Real-time product attribute and spent media information is important to upstream bioprocess optimization, analysis results are often lagging by weeks. Engineers can now take decisions faster by producing their own at-line quality data, accessible workflows coupling small bioreactors like Sartorius Ambr systems to Waters’ BioAccord LC-MS system. Drug quality and yield can be maximized, and downstream impurities minimized. Development is accelerated from weeks to days, saving resources from multiple optimization cycles.

10:00 am Coffee Break in the Exhibit Hall with Poster Viewing (Exhibit Hall A & B)
10:40 am

Operating in the Interspace between Industry and Academia: Development and Management of the Cell Line and Protein Production Facility at the National Biologics Facility

Bjørn Voldborg, MSc, Head, National Biologics Facility, DTU Bioengineering, Technical University of Denmark

The National Biologics Facility at the Technical University of Denmark offers cell line development and protein production services to both academics and industrial customers. This is done in an academic setting and meets all the requirements of an industrial facility. The advantages of a dynamic academic research environment are combined with the documentation and regulatory requirements necessary for the production of biologics that can be used in industrial settings. This results in a flexible and quick responding unit, as well as a platform for education and transfers new discoveries and technologies into the industrial space.

11:00 am

Making Proteins for Geneticists: Life in a Small Protein Facility

Ruth L. Saxl, PhD, Protein Chemistry Scientist, Scientific Services, Jackson Laboratory

The Jackson Laboratory pioneered the use of mice as models for human disease. Today, it discovers precise genomic solutions for human diseases.  JAX Protein Production and Purification Service enables the faculty to advance newly identified genes to the proteins they encode.  While producing proteins, the service focuses on educating the geneticists about proteins. It strives to provide high-quality services while understanding the limits determined by being a small service. 

11:20 am

Challenges in Moving from Research to GLP/GMP

David Blum, PhD, Director, Bioexpression & Fermentation Facility, Biochemistry & Molecular Biology, University of Georgia

Moving from research-based operations to projects that have GxP requirements can be challenging in a university or start-up. Structural as well as cultural issues can hamper progress. This talk will describe experience in moving from research-based operations to projects that require increasing amounts of documentation. Topics will include how to implement a documentation system, how to manage equipment qualifications, as well as staff training and culture.

11:40 am

Accelerating Drug Discovery: Getting to the Right Molecule Smarter & Faster

Lucy Holt, PhD, Manager, Biopharm Discovery, GlaxoSmithKline

This presentation discusses the need for identification of exquisite specificities in mAb discovery.  It demonstrates GSK’s use of automation to keep the discovery funnel wider for longer. This includes the ability to express and purify panels of antibodies in a high-throughput, automated manner, enabling parallel biological and developability screening, and accelerating the drug discovery process.

12:00 pm Session Break
12:10 pm Luncheon in the Exhibit Hall and Last Chance for Poster Viewing (Exhibit Hall A & B)

WORKFLOW MANAGEMENT: ENHANCING QUALITY CONTROL PROCESSES

1:15 pm

Chairperson's Remarks

Jessica A. Williamson, PhD, Protein Production Lead, UCB
1:20 pm

Solving Challenges to the Production of High-Quality Protein Reagents for Early-Stage Drug Discovery 

Dominic Esposito, PhD, Director, Protein Sciences, Frederick National Laboratory

Early-stage drug discovery demands the highest quality protein reagents in support of assay development and deployment, biochemical and biophysical measurement, and structural biology. Failures to control protein quality can lead to lost time and money and adversely impact downstream colleagues and collaborators. We discuss the standard processes used to control protein quality at the Frederick National Laboratory's RAS Initiative and lessons learned from the many proteins we have produced.

1:40 pm

Protein Production QC – A Protein Chemist’s Toolbox

Oleg Brodsky, Senior Principal Scientist, Structural Biology & Protein Sciences, Pfizer Inc.

This presentation covers the protein production setup at Pfizer in San Diego from small-scale triage to multi-liter scale-up capabilities. Various techniques employed to characterize the proteins produced in a fit-for-purpose manner, including some specific examples (eg: SEC-MALS, DLS, DSF, ITC, Mass Photometry, Microscale Thermophoresis, etc.) will be discussed.

2:00 pm

Utilizing a Streamlined Automated Workflow to QC Baculovirus Expression 

Noel Byrne, Associate Principal Scientist, Structural Protein Sciences, Merck & Co., Inc.

The baculovirus expression system is a powerful and widely used methodology to generate large quantities of recombinant protein. However, resource challenges exist with the system; these include time and effort to generate, screen, and store large numbers of viruses. We have developed a streamlined process to QC new viral constructs by incorporating; 1) Off-the-shelf automation platforms 2) Screening miniaturization techniques and 3) Data management platforms. This workflow accelerates viral generation through an improved screening funnel and reduces the total number of viral samples that need to be managed thereby making handling and storage more efficient.

Simon Keen, Vice President, Cell Line Development, Abzena

Stable CHO pools, generated during cell line development (CLD), can be used to purify material for multiple lead candidates. While CLD continues, in depth characterization of candidates can be combined with knowledge gained on their performance in platform USP and DSP conditions, adding manufacturability data to lead selection. The material produced can also be used to drive key development activities, moving these off the critical path and reducing timelines to IND.

Sean Taylor, Field Application Scientist Manager, North America, GenScript

The sample pre-purification processes of centrifugation, filtration and concentration of cell culture supernatants and/or lysates coupled with the post-purification concentration of purified protein eluates represent the most costly and labor-intensive components of a typical protein purification workflow. We describe a novel technology to eliminate these steps through target capture directly in live cell culture or lysates using magnetic beads.

2:50 pm Networking Refreshment Break (Hynes Main Lobby)
3:20 pm Expression Think Tanks: Reducing Costs for Protein Expression, Challenges and Opportunities Collaborate and Communicate
  • What challenges have we faced? ​
  • What types of improvements in expression hosts we have discussed here today?
  • What might address the future and what is needed?

Join a group (topic of your choice) to share and experience and hear what others have learned.​


  • 1) Issues and Challenges with Current Expression Systems
  • 2) New Expression Systems and Process Improvements
  • 3) Parallel Simultaneous Testing of Expression Systems​
  • 4) Issues and Challenges with End-to-End Protein Production
3:50 pm Think Tank Report-Outs: Listen and Learn

During the Think Tank Table discussions, we have shared our experiences and working solutions for end-to-end protein production workflows.  Now as a as a collective community, let’s hear from the table facilitators as they share key the discussion points, strategies and provide a wrap-up of their table’s discussion.   What can we take away and apply?  

4:20 pm Close of Day

Friday, May 6

7:00 am Registration and Morning Coffee (Hynes Main Lobby)
7:30 am Interactive Discussions with Continental Breakfast (Ballroom Pre-Function)

Grab your breakfast and Coffee and join a Discussion Group. Interactive Discussions are informal, moderated discussions, allowing participants to exchange ideas and experiences and develop future collaborations around a focused topic. Each discussion will be led by a facilitator who keeps the discussion on track and the group engaged. To get the most out of this format, please come prepared to share examples from your work, be a part of a collective, problem-solving session, and participate in active idea sharing. Please visit the Interactive Discussion page on the conference website for a complete listing of topics and descriptions.


TABLE 7: Future Platforms for Future Modalities

David Wood, PhD, Co-Founder, CSO, Protein Capture Science; Professor, Chemical & Biomolecular Engineering, The Ohio State University
  • Are columns here to stay, or is it time to reconsider other approaches?
  • What about cleavable tags?  Is the risk justified by the need for platforms?   ​
  • What kinds of products will be driving this innovation? 
  • What do those platforms need to look like in terms of scale, performance and cost?
  • How open are companies to trying disruptive technologies? 
  • Are the innovations in the products enough for now, so we should play it safe on the methods?​

TABLE 8: Common Issues with Transient Protein Production

Richard Altman, MS, Field Application Scientist, Life Science Solutions, Thermo Fisher Scientific
Henry C. Chiou, PhD, Director, Cell Biology, Life Science Solutions, Thermo Fisher Scientific
Dominic Esposito, PhD, Director, Protein Sciences, Frederick National Laboratory
  • What are the current challenges to transient protein production?
  • How has the COVID-19 pandemic affected your workflow and productivity?
  • How do we optimize the whole protein expression workflow process?
  • How can we maintain volumetric yields while scaling transient expression up or down?
  • What cell line(s) should we use and when?
  • What parameters can impact the quality or physical attributes of transiently produced proteins?​

ROOM LOCATION: 304

WORKFLOW MANAGEMENT: OPTIMIZING PURIFICATION AND PRODUCTION

8:25 am

Chairperson's Remarks

David Wood, PhD, Co-Founder, CSO, Protein Capture Science; Professor, Chemical & Biomolecular Engineering, The Ohio State University
8:30 am

Purification Development and Optimization for Scale-Up Production of SARS-CoV-2 Receptor Binding Domain-Based Vaccines

Jungsoon Lee, PhD, Research Director, Downstream Process Development, Baylor College of Medicine

The COVID-19 pandemic put many scientific communities in the race to develop an effective vaccine. We generated recombinant protein antigens derived from the receptor binding domain (RBD) of SARS-CoV-2 spike protein and developed a vaccine. Here we present the purification method developed to produce highly pure RBD protein from the fermentation culture of P. pastoris. Furthermore, we optimized the purification process to support fully scalable production at a low cost.

8:50 am

Accelerating Protein Research to the Clinic through Self-Removing Affinity Tags

David Wood, PhD, Co-Founder, CSO, Protein Capture Science; Professor, Chemical & Biomolecular Engineering, The Ohio State University

Although tags can enable the rapid purification of proteins for research, their potential immunogenicity precludes their use for clinical material. Consequently, research and clinical production groups have been separated by the different approaches needed to fulfill their customer needs. Here we report our commercially available self-removing affinity tag technology, with the potential to bridge high-throughput research with large-scale clinical production under a single, uniquely optimized purification platform.

9:10 am

What Are the Key Considerations for Setting Up and Maintaining an Effective Protein Production Laboratory

Richard Altman, MS, Field Application Scientist, Life Science Solutions, Thermo Fisher Scientific

Protein production is more complex than just the act of expressing the protein. This presentation reviews the end-to-end protein production workflow process including establishing a roadmap for the short-and-long-range planning and outfitting of a protein expression laboratory, determining what expression systems will be critical components of your expression toolbox that can adequately and efficiently support your protein production needs, the complexity of the total protein production workflow (Cloning, Expression, Purification, and Analytics) and how to identify opportunities to increase its efficiency and productivity in a recombinant protein expression facility.

9:30 am

Advancements in Workflows to Support the Ever Increasing Demand & Complexity of Protein Production in Drug Discovery

Kanika Bajaj Pahuja, PhD, Scientific Manager, Protein Sciences, Genentech Inc.

Drug Discovery landscape is ever evolving and constantly demands revolutionary advancements in protein production core laboratories. This presentation will focus on the evolution of our end-to-end automated high-throughput protein expression and purification workflows. It will emphasize the importance of automation and bioinformatics tools that are integrated to provide efficient solutions. This customizable “one for all” approach significantly alleviates some of the bottlenecks in protein production and accelerates the provision of key protein reagents to ambitious projects particularly for challenging and undruggable targets.

Jason Lehmann, PhD, Senior Product Marketing Manager, Marketing and Product Management, Codex DNA

In an industry facing increasingly challenging deliverables, the ability to rapidly build synthetic DNA, mRNA, and protein is critical. Imagine a development pipeline where it was possible to build biology overnight. Join us to learn about how the BioXpTM System, the world’s only fully automated benchtop instrument enables numerous synthetic biology workflows by providing a turn-key, end-to-end solution for generating synthetic DNA and mRNA starting from DNA sequence.

10:30 am Networking Coffee Break (Hynes Main Lobby)
11:00 am Workflow Think Tanks: Reducing Costs, Challenges and Opportunities Collaborate and Communicate
  • What challenges have we faced?
  • What types of improvements we have discussed here today?
  • What might address the future and what is needed?

Join a group to share and experience and hear what others have learned.​

  • 1) Workflow vs technology development?
  • 2) Scale-up when and how to go from research to manufacturing?
  • 3) Doing more with less – how do you test new methods and workflows without blowing up your annual budget?
  • 4) Keeping staff motivated and engaged?
  • 5) Tearing down silos – how do you foster cross-functional collaborations to innovate and improve?
11:45 am Think Tank Report Outs: Listen and Learn

During the Think Tank Table discussions, we have shared our experiences and working solutions for end-to-end protein production workflows.  Now as a as a collective community, let’s hear from the table facilitators as they share key the discussion points, strategies and provide a wrap-up of their table’s discussion.   What can we take away and apply?  

12:30 pm Close of PEGS Summit





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