12th Annual

Optimizing Protein Expression

Choosing and Developing Hosts for Efficient Recombinant Protein Production

May 3 - 4, 2022 | Hynes Convention Center, Boston, MA | EDT

The production of recombinant proteins presents many demands and understanding expression systems is key. Cambridge Healthtech Insitute's 12th Annual Optimizing Protein Expression conference delves into protein expression by examining and enhancing expression systems. What is the best expression system for expressing your protein of choice? Ease and cost of scale-up must be considered to ensure successful bottom-line results. Experts will share case studies and disclose data, while divulging details of expression systems’ underlying mechanisms. Comparing and contrasting systems will also be featured to increase understanding in the quest for greater productivity.

Sunday, May 1

2:00 pm Recommended Pre-Conference Short Course*

SC2: Introduction to Lipid Nanoparticle Characterization and Formulation
*Short Courses will be offered in-person only. Separate registration required. See short course page for details. 

Tuesday, May 3

8:00 am Registration and Morning Coffee (Hynes Main Lobby)

ROOM LOCATION: 304

WHY CHOOSE CHO?

2:15 pm

Chairperson's Opening Remarks

Bjørn Voldborg, MSc, Head, National Biologics Facility, DTU Bioengineering, Technical University of Denmark
2:20 pm

High ER/Golgi Content Renders a Unique CHO Host with High Antibody Productivity and Product Quality

David Busch, PhD, Associate Principal Scientist, Preclinical Development, Merck Research Labs

We have developed a CHO host with specific productivity similar to the levels observed in professional secretory cells.  This CHO host cell also produces complex molecules such as multi-specific antibodies with higher quality compared to other CHO host cells. The superior performance of this host cell may be explained by its significantly higher ER / Golgi content.

2:50 pm

Optimizing Protein Expression: Tailored Glycosylation, Improved Quality and Faster Cell Line Development

Bjørn Voldborg, MSc, Head, National Biologics Facility, DTU Bioengineering, Technical University of Denmark

Based on the outcome of our CHO cell line engineering research, we have developed CHO cell based platforms, enabling rapid production of tailored glycoforms of therapeutic proteins, with improved protein quality and predictable cell line development. Through the glycoengineered CHO platform (geCHO), the effect of N-glycans on therapeutic proteins can be screened, and the optimal glycoform can then be manufactured using the geCHO cell lines. 

Kristin Connelly, Research Associate, Protein Sciences Team, Pyxis Oncology

Glycoprotein nonmetastatic melanoma protein B (GPNMB) is a surface protein co-inhibitory receptor expressed on tumor-associated macrophages (TAMs) and myeloid-derived suppressor cells (MDSCs). GPNMB may interact directly with T-cells, impairing T cell activation to down-modulate anti-tumor immune response. Human GPNMB has soluble and membrane-bound forms, and soluble GPNMB may act as a decoy receptor, resulting in an antibody sink. Here we report an approach for developing antibodies binding specifically to membrane-bound GPNMB.

3:50 pm Refreshment Break in the Exhibit Hall with Poster Viewing (Exhibit Hall A & B)
4:30 pm

Optimization of a Transient Antibody Expression Platform Towards High Titer and Efficiency

Elizabeth A. Greene, Scientist IV, Biotherapeutics Molecule Discovery, Boehringer Ingelheim Pharmaceuticals, Inc.

Chinese Hamster Ovary (CHO) cells are one of the major workhorses for Transient Gene Expression (TGE) of recombinant antibodies. Through a matrix evaluation of multiple factors including inoculum, transfection conditions, amount and type of DNA used (including Filler DNA), and post-transfection culture conditions, we arrived at an uniquely optimized TGE process with higher titer and reduced costs and time, thus increasing the overall efficiency of early antibody material supply.

5:00 pm

Understanding Novel Inhibitory Metabolites on Growth and Protein Synthesis in Mammalian Cells

Seongkyu Yoon, PhD, Professor, Chemical Engineering, University of Massachusetts, Lowell

Mammalian metabolic inefficiencies lead to accumulation of waste by-products. Untargeted and targeted metabolomics for identification of novel metabolites identified six CHO metabolic inhibitors. They negatively impact growth and titer production. Inhibitors were shown to accumulate across different mammalian cell lines. A holistic methodology incorporates metabolomics analysis into cell culture studies.

5:30 pm

Investigating the Influence of Physiologically Relevant Hydrostatic Pressure on CHO Cell Batch Culture

Jongyoon Han, PhD, Professor, Electrical Engineering & Computer Science, Massachusetts Institute of Technology

Although there are many different methods (e.g., temperature, pH, feed) to improve protein production in CHO cells, the role of physiologically relevant hydrostatic pressure in CHO cell culture has not been fully explored. In this study, hydrostatic pressures similar to in vivo interstitial pressure values (0~90 mmHg) were applied to batch CHO cell culture, and their cell growth/metabolism and IgG1 production were examined. Our results indicate that hydrostatic pressure can increase the maximum cell concentration by up to 50%. These findings are important for the optimization of fed-batch or perfusion culture for directing cell growth and improving antibody production.

6:00 pm Close of Day
6:00 pm Dinner Short Course Registration (Hynes Main Lobby)
6:30 pm Dinner Short Courses*

*Short Courses will be offered in-person only. Separate registration required. See short course page for details.

Wednesday, May 4

7:30 am Registration and Morning Coffee (Hynes Main Lobby)

ROOM LOCATION: 304

CELL-FREE SYSTEMS

8:25 am

Chairperson's Remarks

Vincent Noireaux, PhD, Professor, Synthetic Biology and Biological Physics, University of Minnesota
Vincent Noireaux, PhD, Professor, Synthetic Biology and Biological Physics, University of Minnesota

Cell-free transcription-translation (TXTL) has become a highly versatile multidisciplinary technology for bioengineering and synthetic biology. By enabling the rapid expression of genes and gene circuits, TXTL integrates an ever-growing variety of applications. In this talk, I will present an all-E. coli TXTL system and discuss the capabilities of this system to rapidly-produce milligrams amounts of proteins and bacteriophages at high titers.

9:00 am

Rapid Genetic Sequence Characterization and Expression Optimization with Cell-Free Systems

Matthew W. Lux, Research Biologist, BioSciences, Edgewood Chemical Biological Center

Cell-free expression systems allow evaluation of gene expression from DNA constructs without cloning, accelerating characterization timelines. Low reaction volumes and experimental assembly using acoustic liquid handling further increase the throughput possible. We have shown rapid screening of a library of genetic regulatory sequences by varying PCR primers. We further report use of a similar approach to modify the composition of the cell-free reaction to optimize expression of a target gene.

9:30 am

From Cells to Cell-Free Protein Synthesis within 24 Hours Using Cell-Free Autoinduction Workflow

Javin Oza, PhD, Assistant Professor, Chemistry & Biochemistry, California Polytechnic State University

Numerous developments have made the cell-free expression platform more accessible to new users and have expanded its range of applications. However, the workflow for E. coli cell extract preparation has remained a bottleneck. We have developed the Cell-Free AutoInduction (CFAI) workflow that allows users to grow cells, produce extracts, and conduct cell-free protein expression within 24 hrs. Additionally, the CFAI workflow reduces the time and cost of generating cell extracts.

Takashi Ebihara, PhD, COO, GeneFrontier Corporation

Our unique platform technology, PUREfrex, is a fully reconstituted (or rebuilt) cell-free protein expression system. It's easy to customize the system for various applications, and useful for high throughput screening of various kinds of biologics as well. Plus, we established robust ribosome display with customized PUREfrex and named PUREfrexRD, which has great advantage in screening of highly diversified library to generate new biologics such as antibodies or cyclic peptides.

Cassie-Marie Peigne, PhD, Scientific Support Specialist, Polyplus-transfection

Production of biotherapeutic protein and antibodies relies on successful selection of high performing clone for manufacturing. To accelerate this process, the right transfection reagent is key to produce milligram to gram quantities of proteins and to overcome productivity challenges of diverse proteins from therapeutic antibodies to difficult-to-express proteins. We demonstrate how FectoPRO transfection reagent is the go-to transfection reagent that combines productivity and flexibility in suspension CHO and HEK-293 cell lines.

10:30 am Coffee Break in the Exhibit Hall with Poster Viewing (Exhibit Hall A & B)
11:10 am Transition to Plenary Keynote

PLENARY KEYNOTE LOCATION: Ballroom B

PLENARY KEYNOTE SESSION

11:20 am

Plenary Keynote Introduction

Horacio G. Nastri, PhD, Associate Vice President, Biotherapeutics, Incyte Corporation
11:30 am

Future Directions in Drug Discovery & Development

Roger M. Perlmutter, MD, PhD, Chairman and CEO, Eikon Therapeutics, Inc.

The intrinsic complexity of human physiology has generally defeated attempts to model normal cellular functions, meaning that until recently we have had few tools to disentangle the molecular pathology associated with common illnesses. Now, dramatic improvements in instrumentation, automation, and computing provide ways to measure dynamic responses in living cells, and to use these measurements to identify both new disease targets, and new chemical starting points for future medicines. These fundamental advances, coupled with improvements in clinical trial design and execution, together offer hope that the new therapeutics landscape will include compounds with superior therapeutic indices, developed at lower cost. I will illustrate how these opportunities might materialize, drawing examples from current research that integrates image analysis, computation, engineering, molecular biology, and medicinal chemistry.

12:15 pm Session Break

ROOM LOCATION: 304

Emanuel Schmid-Siegert, PhD, Computational scientist, NGSAI (JSL) - Head of discovery and products, BIOINFORMATICS, NGSAI - JLS - Selexis

Sequencing of genomes has become an essential tool to study human/viral/microbial and cell-line diversity. CHO cell-line development benefits from these multi-modal sequencing advancements. We will present our solutions that assess comprehensively the genotypic stability of clones, the location and architecture of transgene integration and additionally the quality and risk associated with a clone selection. 

Ellen Hilgenberg, PhD, Business Development Manager, ProBioGen AG

An elegant highly active transposase equipped with epigenetic readers carries expression units to most active spots in the host genome providing desired expression levels and stability. With this foundation the focus for screening producer clones is entirely on correct pairing and PTMs. We will discuss how this system is adapted to various formats and removing a critical bottleneck for bi-specifics during clinical development.

1:30 pm Find Your Table and Meet Your Discussion Moderator
1:35 pm Interactive Discussions (Exhibit Hall A & B)

Interactive Discussions are informal, moderated discussions, allowing participants to exchange ideas and experiences and develop future collaborations around a focused topic. Each discussion will be led by a facilitator who keeps the discussion on track and the group engaged. To get the most out of this format, please come prepared to share examples from your work, be a part of a collective, problem-solving session, and participate in active idea sharing. Please visit the Interactive Discussion page on the conference website for a complete listing of topics and descriptions.

TABLE 7: Operating in the Inter-Space Between Academia and Industry

Bjørn Voldborg, MSc, Head, National Biologics Facility, DTU Bioengineering, Technical University of Denmark
  • What are the advantages/pitfalls?
  • What is needed?
  • When to do what? Collaboration, Partnering or Fee-for-Service?
  • Which infrastructures, technologies, competences are relevant?
  • Funding, Pricing, Priorities & Quality
  • Staff: Students? PostDocs? Staff Scientists?​

TABLE 8: Cell-Free Gene Expression

Vincent Noireaux, PhD, Professor, Synthetic Biology and Biological Physics, University of Minnesota
  • Is poor reproducibility from lab-to-lab or systems-to-systems a big issue?
  • Can the preparation and utilization of CFE systems be standardized?
  • What are the current major CFE limitations?
  • What should the next major improvements to CFE systems be?​

ALTERNATIVE EXPRESSION SYSTEMS

2:20 pm

Chairperson's Remarks

Pravin Mahajan, PhD, Associate Director, Molecular Sciences, Astex Pharmaceuticals Ltd.
2:25 pm

Production of TCRαβ for Single Molecule Mechanotransduction Studies: Opportunities and Challenges

Robert J. Mallis, PhD, Instructor, Dermatology, Harvard Medical School

The aßT cell receptor (aßTCR) governs the recognition of virally infected or cancerous cells by aßT cells to initiate an immune response. The aßTCR probes cells in its vicinity for ligand, proteolytically-derived peptide bound to major histocompatibility complex molecules (pMHC). The aßTCR-pMHC recognition was recently found to be force-dependent. To probe the origins of mechanosensing, a toolbox was developed for single-molecule (SM) study of the TCR-pMHC interaction. A eukaryotic transient expression system was utilized, leveraging antibody affinity purification. Production of the heterodimeric aßTCR for SM proved to be quite robust, allowing systematic deconstruction of TCR mechanosensing.

2:55 pm

Generation and Characterization of a Vaccine Antigen Against SARS-CoV-2 Based on the Nucleocapsid Protein of the Virus Fused to Human CD40L

Thailin Lao Gonzalez, MsC, Agriculture Research Division, Center for Genetic Engineering and Biotechnology, Cuba

The N protein of the SARS-CoV-2 virus constitutes an attractive target to be used in a subunit vaccine. To improve the quality of N protein as antigen, it was fused to the extracellular domain of human CD154 (CD40L). Subsequently, the N-CD gene was cloned into a lentiviral vector. Lentiviral particles bearing the N-CD gene were used to transduce HEK-293 cells. Polyclonal populations were obtained and characterized. Next, cell clones were obtained by limiting dilution cloning and adapted to growth in serum-free medium and suspension culture. Finally, experiments were carried out on animals to verify the immunogenicity of this antigen.

Ishita Barman, Field Application Scientist, Life Science, GenScript USA, Inc.

This presentation will focus on key platform technologies to address and overcome timeline challenges in therapeutic drug development. Starting with a high through-put antibody discovery platform (MonoRab) and optimized mammalian expression system (TurboCHO) developed in-house, our goal is to provide key reagents (like anti-ID antibodies and kits to enable PK studies) in an effort to meet faster timelines without compromising quality.

Dennis Karthaus, PhD, Director Protein Products & Assays, IBA Lifesciences

High producing stable mammalian cells are often required for producing recombinant proteins. Traditional methods like antibiotic selection cause high levels of cell stress during the selection or require high initial costs for instruments. Here, we present a new bead based method for generating high producing stable cell pools that avoids substantial negative effects on viability or cell growth after selection and that does not have high acquisition costs for instruments. 

3:55 pm Ice Cream Break in the Exhibit Hall with Poster Viewing (Exhibit Hall A & B)
4:30 pm

Protein Expression, Purification, and Characterization for Fragment-Based Drug Discovery

Pravin Mahajan, PhD, Associate Director, Molecular Sciences, Astex Pharmaceuticals Ltd.

Astex has successfully applied its proprietary FBDD platform to generate multiple new drug candidates that are progressing in clinical development. The platform employs X-ray crystallography and a range of biophysical methods for FBDD. Moreover, Astex has established a state-of-the-art cryo-EM facility. Production of suitable quality proteins is a prerequisite for supporting these platforms. I will share our experience and case studies on expression, purification, and characterisation of challenging drug targets.

5:00 pm

Characterizing and Optimizing Baculovirus Driven Production of Closed-Ended DNA in Sf9 Cells for Gene Therapy

Daniel J. Blackstock, PhD, Principal Scientist, Process Development, Generation Bio

Baculovirus expression systems composed of Cap-, Rep-, and trans-gene baculoviruses are routinely employed for the scalable expression of adeno-associated virus (AAV) gene therapy vectors. Here, we describe the characterization and development of a baculovirus system devoid of the Cap-gene for expression of capsid-free closed-ended DNA (ceDNA) for non-viral gene therapy. The expression challenges faced and methods for controlling and maximizing ceDNA expression yields will be discussed.

5:30 pm PANEL DISCUSSION:

Alternative Expression Systems

Panel Moderator:
Pravin Mahajan, PhD, Associate Director, Molecular Sciences, Astex Pharmaceuticals Ltd.

What is your host of choice?  Maximizing your productivity may necessitate an alternative host expression system.   This panel of experts share their host/platform selections – which may or may not have been their primary host of choice. ​

  • Choice of expression system for specific downstream applications
  • Strategies for expressing multi-protein complexes
  • Cell-free protein expression systems
  • Incorporation of unnatural amino acids
Panelists:
Daniel J. Blackstock, PhD, Principal Scientist, Process Development, Generation Bio
Thailin Lao Gonzalez, MsC, Agriculture Research Division, Center for Genetic Engineering and Biotechnology, Cuba
Robert J. Mallis, PhD, Instructor, Dermatology, Harvard Medical School
6:00 pm Networking Reception in the Exhibit Hall with Poster Viewing (Exhibit Hall A & B)
7:00 pm Close of Optimizing Protein Expression





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