17th Annual

Difficult-to-Express Proteins

Overcoming Production Challenges

May 2 - 3, 2022 | Hynes Convention Center, Boston, MA | EDT

What makes a protein difficult to express, produce and purify? A host of problems including folding, toxicity to hosts, and purification issues just to name a few. Cambridge Healthtech Institute's 17th Annual Difficult-to-Express Proteins conference examines the challenges encountered by researchers when striving for high-yield production of “difficult-to-produce” proteins (DTEPs), and the strategies and technologies that have proven successful in overcoming the challenges to tame these “finicky” proteins.

Sunday, May 1

1:00 pm Registration for Pre-Conference Short Courses (Hynes Main Lobby)
2:00 pm Recommended Pre-Conference Short Course*

SC2: Introduction to Lipid Nanoparticle Characterization and Formulation
*Short Courses will be offered in-person only. Separate registration required. See short course page for details. 

2:00 pm Main Conference Registration Open (Hynes Main Lobby)

Monday, May 2

7:00 am Registration and Morning Coffee (Hynes Main Lobby)

ROOM LOCATION: 304

EXPEDITIOUS EXPRESSION AND PRODUCTION

8:25 am

Chairperson's Opening Remarks

Yves Durocher, PhD, Research Officer & Head, Mammalian Cell Expression, National Research Council Canada
8:30 am

Rapid, High-Yield Production of Full-Length SARS-CoV-2 Trimeric Spike Ectodomains Using Stable CHO Pools

Yves Durocher, PhD, Research Officer & Head, Mammalian Cell Expression, National Research Council Canada

Stably transfected CHO clonal cell line is the standard platform for manufacturing recombinant glycoprotein therapeutics. The current pandemic, concurrently with improvements in the performance of stable CHO pool platforms, have contributed to their wider acceptance by the regulatory authorities to accelerate clinical evaluation of potentially life-saving drugs. I will present our recent efforts using stable CHO pools to manufacture the SARS-CoV-2 trimeric spike protein as a vaccine subunit antigen.

9:00 am

Production of an RBD-Based Recombinant Protein Vaccine against SARS-CoV-2 in Pichia pastoris

Zhuyun Liu, Research Director, Upstream Process Development, Baylor College of Medicine

SARS-CoV-2 receptor domain binding (RBD) protein is a vaccine candidate against COVID.  The wild type RBD protein expressed in yeast has low-yield and tendency to aggregate. By introducing two genetic modifications, we greatly improved the protein expression and stability without changing its biological function. Fermentation process was optimized, and the reproducibility of the process was established with an average yield of 428 ± 36 mg/L. This production process has been transferred to an industrial manufacturer, who has successfully advanced this vaccine candidate into Phase 3 clinical trial.

Lisa Prendergast, PhD, Associate Director of Expression System Sciences, Licensing, Lonza

Generating a bispecific antibody, which is correctly and stably paired, is challenging. Various platforms have developed Heavy-Light chain (HC-LC) mispairing fixes, but there are many rate limiting steps for efficiently expressing these molecules in a CHO system including adaptation of downstream processes. bYlok technology is a design engineering approach that stabilises the interaction between the HC and LC, essentially removing the mispairing problem whilst retaining a more natural antibody structure.

10:00 am Networking Coffee Break (Pre-function Hall A & Ballroom Pre-Function)
10:30 am

Scalable, High-Resolution Purification of SARS-CoV-2 Spike Protein

Raja Ghosh, PhD, Professor, Chemical Engineering, McMaster University

Recombinant SARS-CoV-2 Spike protein has been proposed as a vaccine candidate for immunization against COVID-19. It is a very large, fragile, and difficult to purify protein. Its large size restricts its access to binding sites present in typical resin media used for chromatographic purification and thereby limits its binding capacity. A membrane chromatography-based rapid and scalable method for purification of recombinant SARS-CoV-2 Spike protein will be discussed.

11:00 am

Strategies to Accelerate Process Development from Preclinical to Manufacturing for Gene Therapy

Hassan Sakhtah, PhD, Associate Director, Bioprocess Development, CuriRx Inc
Sam Zhang, Senior Director of CMC Management, CMC, WuXi Biologics

We will discuss the challenges in high-throughput protein production for small and large molecule drug discovery. We demonstrate the parameters and design space required to generate high-quality proteins for HTS, antibody discovery, in vivo and developability studies. Supported by our industry-leading platforms, the Protein Sciences department at WuXi Biologics provides production services utilizing various expression systems for the generation of monoclonal, bispecific and multispecific antibodies, and other recombinant proteins.

12:00 pm Luncheon Presentation (Sponsorship Opportunity Available) or Enjoy Lunch on Your Own
12:30 pm Find Your Table and Meet Your Discussion Moderator
12:45 pm Interactive Discussions (Ballroom Pre-Function)

Interactive Discussions are informal, moderated discussions, allowing participants to exchange ideas and experiences and develop future collaborations around a focused topic. Each discussion will be led by a facilitator who keeps the discussion on track and the group engaged. To get the most out of this format, please come prepared to share examples from your work, be a part of a collective, problem-solving session, and participate in active idea sharing. Please visit the Interactive Discussion page on the conference website for a complete listing of topics and descriptions.

TABLE 7: Challenges in Finding/Training/Retaining Technical Staff Post-pandemic

Anne Skaja Robinson, PhD, Trustee Professor & Department Head, Chemical Engineering, Carnegie Mellon University
  • Best practices in remote recruiting and onboarding?
  • Job flexibility as a retention incentive?
  • How do we train or retrain entry-level scientists with limited hands-on experience?
  • What skills are missing in entry-level or more experienced scientific staff?​

TABLE 8: Challenges in Working with Protein Complexes

Oleg Brodsky, Senior Principal Scientist, Structural Biology & Protein Sciences, Pfizer Inc.
  • Protein expression and purification strategies    ​
  • Biochemical/biophysical/structural characterization
  • Opportunities and pitfalls – what works and what doesn’t
1:30 pm Session Break

STRUCTURALLY COMPLEX TARGETS

1:45 pm

Chairperson's Remarks

Anne Skaja Robinson, PhD, Trustee Professor & Department Head, Chemical Engineering, Carnegie Mellon University
1:50 pm

Insights into the Role of N-Linked Glycosylation in Directing Subcellular Localization of Membrane Proteins Expressed in Yeast and Its Impact on Function

Monica D. Rieth, PhD, Assistant Professor of Biochemistry, Southern Illinois University

Glycosylation is the biochemical process of the attachment of sugar moieties to proteins during co-translational or post-translational modification and occurs during expression in organisms like Saccharomyces cerevisiae.  For integral membrane proteins, such as G-protein coupled receptors, high-level production is especially challenging due to their extreme hydrophobicity and instability in the absence of a cell membrane. This work aims to uncover factors affecting protein subcellular localization during heterologous expression in S. cerevisiae. We postulate a critical link between subcellular localization during expression and the production of functional proteins with an emphasis on GPCRs.

Anne Skaja Robinson, PhD, Trustee Professor & Department Head, Chemical Engineering, Carnegie Mellon University

The adenosine A2A receptor (A2AR) shows exceptional yields in all expression hosts, unlike the closely related G protein-coupled receptors A1R and A3R. By creating chimeric A3R and A1R proteins with A2AR we examined the G-protein coupling specificity. In this talk, I will describe these results as well as binding of G-protein to different purified chimeras.

Richard Buick, PhD, Chief Scientific Officer, Fusion Antibodies

Multiple antigen formats are often needed for antibody discovery to overcome issues associated with avidity and stability. If molecules cannot be standardized, optimization may be needed for each new antigen. Fusion Antibodies has developed a process for the routine production of multiple antigen formats using a unique application of knob-in-hole technology. The molecules generated give greater diversity compared with approaches that use a small number of standard antigens.

3:05 pm Sponsored Presentation (Opportunity Available)
3:20 pm Networking Refreshment Break (Pre-function Hall A & Ballroom Pre-Function)
3:50 pm Transition to Plenary Keynote

PLENARY KEYNOTE LOCATION: Ballroom B

PLENARY KEYNOTE SESSION

4:00 pm

Plenary Keynote Introduction

K. Dane Wittrup, PhD, C.P. Dubbs Professor, Chemical Engineering & Bioengineering, Massachusetts Institute of Technology
4:10 pm

Challenges and Opportunities in Developing Non-Antibody Protein Therapeutics

Jennifer R. Cochran, PhD, Shriram Chair & Professor, Bioengineering & Chemical Engineering, Stanford University

Protein therapeutics are dominating the pharmaceutical market, a steadily increasing trend that started with human insulin in 1982. Monoclonal antibodies used to treat cancer, rheumatoid arthritis and other diseases now account for a large share of these efforts, yet the notion that an antibody could be manufactured at scale and delivered to a patient as an effective therapeutic regimen was initially met with much skepticism. My presentation will discuss challenges and opportunities for developing non-antibody engineered protein therapeutics as next-generation medicines.   

YOUNG SCIENTIST KEYNOTE

4:55 pm

Engineering New "Signaling" Proteins to Enact Anti-Tumor Responses

Xin Zhou, PhD, Assistant Professor, Biological Chemistry and Molecular Pharmacology, Harvard Medical School; Principal Investigator, Cancer Biology, Dana-Farber Cancer Institute

Throughout its lifetime, a human cell receives numerous signals from the cell itself, from neighboring cells, and from the surrounding microenvironment. Synthetic proteins that can detect and respond to various signals from tumor or immune cells or their surrounding environment can transform the way of how we study and treat diseases. This presentation describes the design and engineering of dynamic, functional signaling proteins, such as regulated antibodies, kinases, and fluorescent proteins, and the leveraging of their new functionality to gain a deeper fundamental understanding of malignancies and to discover new avenues for therapeutic intervention.

5:40 pm Welcome Reception in the Exhibit Hall with Poster Viewing (Exhibit Hall A & B)
7:00 pm Close of Day

Tuesday, May 3

8:00 am Registration and Morning Coffee (Hynes Main Lobby)

ROOM LOCATION: 304

PRODUCTION OF MEMBRANE PROTEINS

8:25 am

Chairperson's Remarks

Oleg Brodsky, Senior Principal Scientist, Structural Biology & Protein Sciences, Pfizer Inc.
8:30 am

Production of a Human Histamine Receptor for NMR Spectroscopy in Aqueous Solutions

Matthew T. Eddy, PhD, Assistant Professor, Chemistry, University of Florida, Gainesville

A major bottleneck in human GPCR structural biology is the production of sufficient quantities of folded and functional receptors. Expressing GPCRs for nuclear magnetic resonance experiments is made even more challenging by the requirement to incorporate stable-isotope probes.  We present an optimized workflow for recombinant production of human GPCRs in Pichia pastoris for biophysical experiments, illustrated by the production of a human histamine receptor.

9:00 am

Deorphanizing Tough Membrane Targets Using Recombinant Extracellular Vesicles

Shengya Cao, PhD, Senior Scientist, Genentech

Membrane proteins are major drug targets because of their central roles in regulating cellular communication. Despite this, membrane receptors remain underrepresented in interaction databases because of technical limitations. To overcome these challenges, we developed an extracellular vesicle-based method for membrane protein display that enables purification-free and high-throughput detection of receptor-ligand interactions in membranes. We demonstrate that this platform is broadly applicable and can be used to profile endogenous vesicles. We are continuing to improve our vesicle-based methods for the biochemical characterization of difficult-to-purify membrane proteins, membrane-adjacent proteins as well as of the vesicles themselves.

9:30 am

Self-Assembling Peptides for Membrane Protein Purification and Stabilization

Sotirios Koutsopoulos, PhD, Researcher, Center for Biomedical Engineering, Massachusetts Institute of Technology

Membrane proteins are integral proteins of the cell membrane and are directly involved in the regulation of many biological functions and in drug targeting. However, our knowledge of such proteins is limited due to difficulties in producing sufficient quantities in a soluble, functional, stable state. Designed, surfactant-like peptides may be used to extract membrane proteins from the cell membrane and stabilize the protein for further studies.

Katherine Lam, Research Scientist, AbCellera

GPCRs are highly sought-after drug targets, but challenges in producing proteins, driving immune responses, and finding hits have limited the development of antibody therapies against these high-value targets. To address these challenges, we leveraged our fully integrated technology stack to rapidly discover functional antibodies against a GPCR target and identify lead candidates with species cross-reactivity and potencies that rival small molecule clinical-stage benchmarks.

Greg Bleck, PhD, Vice President, Research and Development, Catalent Biologics

During this talk, Catalent will share the latest data leveraging GPEx Lightning to generate highly stable, highly productive cell pools and discuss how the GPEx suite of technologies can be tailored to the specific needs of each individual program on its path to clinical trials.

 

10:30 am Coffee Break in the Exhibit Hall with Poster Viewing (Exhibit Hall A & B)

PRODUCTION OF FINICKY PROTEINS

11:10 am

Production of Human Mitochondrial ABC Transporters in E. coli

Maria E. Zoghbi, PhD, Assistant Professor, Molecular Cell Biology Department, University of California, Merced

Many biochemical and structural studies require extensive mutational analysis of the protein of interest. This task can be time-consuming and expensive when using eukaryotic expression systems. Therefore, the use of bacteria as expression system can be very advantageous. Thus, we decided to test the expression of a mitochondrial human ABC transporter, which does not require post-translation modifications, in bacteria. We can successfully use bacteria to produce milligrams of the purified, fully functional human transporter. Our lab is now extending this approach to produce other human mitochondrial ABC transporters.

11:40 am

Production of Human MOZ Acetyl Transferase Quaternary Complex in Insect Cells

Oleg Brodsky, Senior Principal Scientist, Structural Biology & Protein Sciences, Pfizer Inc.

This talk will cover protein expression, purification, and biochemical/biophysical characterization of the human full-length MOZ 4-protein complex in insect cells. The talk will highlight the challenges of overexpressing a multimeric complex recombinantly, as well as the enablement of various biochemical and biophysical assays that resulted from it.

12:10 pm

Tags and Buffers for SPR: Perfecting Proteins to Probe Biophysical Behavior

Maya Rao, PhD, Senior Scientist, UCB, Inc.

Binary and ternary complex formation assays are crucial for biotherapeutic research and producing pure, high-quality proteins for SPR analysis may be considered an art. How do we engineer tags and linkers, optimize buffers, and develop workflows for protein complexes, specifically to conserve native folding, promote access to binding pockets, and reduce SPR artifacts? Through thoughtful design and effective strategy, one can accomplish the binding-competence of their SPR dreams.

Russell Coleman, Director, Strain Engineering, Platform Technology & Innovation, Pelican

The Pelican Expression Technology platform (formerly the Pfenex Expression Technology) is a robust, cost-effective, commercially validated platform based on Pseudomonas fluorescens for recombinant protein production with four approved products utilizing the technology. Example expression studies are presented demonstrating the extensive Pelican toolbox of genetic elements, host strains, and automated strain screening that enabled rapid the expression for two complex and challenging antibody formats: a Fab fragment and picobodies.

1:10 pm Luncheon Presentation (Sponsorship Opportunity Available) or Enjoy Lunch on Your Own
1:40 pm Close of Difficult-to-Express Proteins
6:00 pm Dinner Short Course Registration (Hynes Main Lobby)
6:30 pm Dinner Short Courses*

Separate registration required. See short course page for details.






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